Bbtools-flver To Sdm-

Implementing a "Bbtools-flver To Sdm-" solution presents several specific challenges:

"Bbtools" likely refers to a suite of bioinformatics tools developed by the Bioinformatics and Biotechnology Institute (BBI) or similar organizations. These tools are often used for various tasks in bioinformatics, including genome assembly, alignment, and analysis. Bbtools-flver To Sdm-

bbtools-flver-to-sdm -i flver_report.txt -o output.sdm.json --format json

from bbtools_sdm import convert
convert(flver_path="report.txt", output_path="data.sdm.parquet")

FLVer Input (snippet):

Read_1234	length=1450	expected=1500	dev=-3.3%	status=WARN
Read_5678	length=3000	expected=3000	dev=0.0%	status=PASS

SDM Output (JSON):

  "sdm_version": "1.0",
  "records": [
"entity":  "id": "Read_1234" ,
      "feature":  "length": 1450 ,
      "reference":  "length": 1500 ,
      "quality":  "deviation_percent": -3.3 ,
      "validation":  "status": "WARN" 
    ,
"entity":  "id": "Read_5678" ,
      "feature":  "length": 3000 ,
      "reference":  "length": 3000 ,
      "quality":  "deviation_percent": 0.0 ,
      "validation":  "status": "PASS"
]