Before running the conversion, ensure your environment is ready:
| Requirement | Specification | | --- | --- | | OS | Ubuntu 20.04/22.04 LTS, CentOS 7+, or Windows Server 2019+ | | SDM Type | YUM/DNF (RHEL), APT (Debian), or SCCM (Windows) | | Java | OpenJDK 11 or 17 (BBTools requires Java) | | Disk Space | Minimum 5 GB (for reference genomes + filters) | | Network | Access to GitHub, SourceForge, or internal artifact repo | bbtoolsflver to sdm install
Before running any commands, ensure you have: Before running the conversion, ensure your environment is
Installation could involve:
If SDM input requires presence/absence tables derived from sequence reads: Select your
# Map filtered reads to reference
./bbmap.sh ref=target_species.fasta in=clean.fastq out=mapped.sam
Select your .flver file.
The model will load with its skeleton and materials.